Empty Folder Nuker is a freeware application that can scan your computer for empty folders and delete them.
To scan for empty folders, launch application and select the folder you want to scan.
After completion of scan, it will give you a list of empty folders found.
You can uncheck any folder you don’t want to delete here. Next, click Delete to complete the process.
Shell integration is also possible so that you can scan a folder from Windows itself.
Empty Folder Nuker is a portable application and works on all Windows versions.
Download: Empty Folder Nuker Version 1.3.0 [340 Kb]